MmuINT1013750 @ mm10
Intron Retention
Gene
ENSMUSG00000086741 | Gm15816
Description
predicted gene 15816 [Source:MGI Symbol;Acc:MGI:3802114]
Coordinates
chr8:23140825-23143204:-
Coord C1 exon
chr8:23143124-23143204
Coord A exon
chr8:23141266-23143123
Coord C2 exon
chr8:23140825-23141265
Length
1858 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
GACTCAATATCTGCTTCCAGATC
3' ss Score
7.4
Exon sequences
Seq C1 exon
CTGCCTTGCCGTTGCTGCCTCCCATTGAGGCCCTGGATAAAGTCTCAGCCAACAAACACAAGTGCAAGTCCGGCTGCCACT
Seq A exon
GTAAGAAAGATAGGGCTGAAGAAGACATTCTCCCTCCCTCCCTCCTTTAAAAATGACTCGAACCTTTGGGTTGTTTCCCAGCCGGGATCAAGAGCGAGTCTTGGCCTTTAAATCAGCAGACATGCAGGACCCTCCTGGCAGTGCTGGGGTTAACACTGTGACCTCCTTACAGCTGCTGAGGAGTCAGGGCTAATTTTACTCTCCTATCGGGCTCTGCCCAGCCTCATATTGTCCAAGTGCTGAGATATGTTGGGAAGCATCAAGTCAGCACTTCTGCCGGCCCAGGAGGCTGCGCGGGCCCTGCTTTTTGCAGAAGGCAGAAAACCAGTGACTGCCTGCTGCTCGGCTCTGGAGCTGGGCCCTGAGAGTTCAGGGGTGGGGGTGGGTGGGGGAAGGGGCAATAACCCAGTTAGTGCTGTGCATGGGCAGAGGCTGTGATGCTGGCTTGTTCCCCGTTGTCTCCCACCCTGACGCATCCTGTACTGAGCTGCCCCGAGCTGAGCACAGTGAAGGACCTCGGGGCAGCTCAGTACAGGACCCCTCAGGGAGGGCGAGATCAGAGCTGGCTGCTGAGGCTGGCTCTTGGGCACTGCAGCCTGCTGAAGATCTTCGTTGCGTAGCCTGGCCCACCCATCCTTGGCCCCCGCCCTGACGCACACCCCTCACACACTAGTACAGCCGTTAGCCATGAAGACCTTCCTCACTTCCAGGGAAGATTCTACCTATGCCTTGGGTCTGCTAACTTAGTTCCTTCTCAGACATCAAGCGAGCAGCCTTGTTCTCAGAACAGTAATCGAATTAAAGCTATGGCAGGTTAGGACTCCAGTGAGCCTTAAGGTTTATGTCTGGCGTGCTTTCTGACCATGTGTAGTGAGATAGGCTCAGACTGTGTTTTGAGCACTACTTCAAAGCACTATTTTAACATTATACTGGTACAGTCAGGCATGGTGCTGCATGCCTTTAATTCCAGTACAGAGGCAGCTGGATCTCTGTGGGTTCAAGGCCAGCCTGGTCTATTTAGCAAGTTCCAGGACAGCCAGGGCTATATAGAGAGACTCTGTTTATAACTAAATTGCACAGGGACTGAAGGTGTGGCTCAGAATGCCTATCTCTGGTCCCACCCCCCTAACACAGCCAAAAAAGACAAAAGAAAATATAAATAAGCAAAATAAACCCAAGCCCCTGATTTTGTGTACTCTCCAGCAGACTGGTGTCAACAGAGAGGCACAGGTCTGAAGAGGACGTGGAGGGGCAGAGACAGTGGCTAGTTTGAGGAGTGGGATTCTGAGAGTCTGGTTTTAACTCTGAACTGAGCTAGTAGTGCAAGGATGGGGTGGGTTGGGAGCAGCAAGCAGCTACCTCATCAAGGACCATGCCAGCAAGGACGAGAAAGCCACTGTTACCTCCCAAGGGGCTACTTGAGGAGAGGTCACTGCTTGCCCCTTTTCAGGCTGGCCCGCTTCACTATCTGAGCCCCCTTCCTGCCCTCTATCAGGTCCGGCTGGAGTCCACTCCCTCTTAGCTCCACCTGGAGACAGCATCAGAGACAGAAAGTAGGAAATCACACAGGCAGATGAGCAAGCTCGGGCAGGAAGTGAGAAGGGTCAGGACAGAGAGGAGTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGTGGGAACACCATCTGTCCGCCAGAAAGGTAGCCAGGGGCAGCATTGCAACCTGGAGCAAAGTAGAGGTGAGGCGGAGGTGAACTTGCTGCGGCCTCCAGGGGCCTGCAGTGCCTTGGTACCTTAGTAAGTTTCATAAAGGACTCAATATCTGCTTCCAG
Seq C2 exon
ATCCCCAGGGTCTGCCAGGGGACCCTCGACAATCACCTCCTCGTGCTGCTGGGTGTCGATGGCACCAGACGAGTCTACCTGCCGGACGACTTTGCGAATGATCTGGAAAGAGAGGGGAAGAGAAGGAGAGATGGTCAAGTCGTCAGGACAACATTTGAGAAGAACAGGGCTCCAGCAGAGGCACCAGGAGGAGAGGCCATGGCTTCCTGTCCCCCGGAGCCAAGAAGAAGCCTTTCTCTGCTGTCATCTATGGGGAATGTCGGTGGGGCTTGGACTGGGGAGCACGGCTGGCAGGGCTTCGGCAAACATTGGCTTGGGCACGCGCAGCGCTGCCTCAGCCCTCCGCCATCCCACTCTGTTCCTTGGAATGGATGGAAGTTCGGTCTGACTATCGTGCCTCTACAGTGCCTAAGGACAGAGGCAGGCAACCCTTCTATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086741:ENSMUST00000141930:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACACAAGTGCAAGTCCGG
R:
CCAAGCCAATGTTTGCCGAAG
Band lengths:
346-2204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types