MmuINT0015093 @ mm10
Intron Retention
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23141164-23141720:+
Coord C1 exon
chr8:23141164-23141229
Coord A exon
chr8:23141230-23141595
Coord C2 exon
chr8:23141596-23141720
Length
366 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATT
5' ss Score
5.41
3' ss Seq
GTCTCTGATGCTGTCTCCAGGTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
ATCATTCGCAAAGTCGTCCGGCAGGTAGACTCGTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
Seq A exon
GTGATTGTCGAGGGTCCCCTGGCAGACCCTGGGGATCTGGAAGCAGATATTGAGTCCTTTATGAAACTTACTAAGGTACCAAGGCACTGCAGGCCCCTGGAGGCCGCAGCAAGTTCACCTCCGCCTCACCTCTACTTTGCTCCAGGTTGCAATGCTGCCCCTGGCTACCTTTCTGGCGGACAGATGGTGTTCCCACCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTACTCCTCTCTGTCCTGACCCTTCTCACTTCCTGCCCGAGCTTGCTCATCTGCCTGTGTGATTTCCTACTTTCTGTCTCTGATGCTGTCTCCAG
Seq C2 exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAGGGCAGGAAGGGGGCTCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGCAAGCAGTGACCTCTCCTCAAGTAGCCCCTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543:ENSMUST00000118733:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.666
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATTCGCAAAGTCGTCCGG
R:
GGGGCTACTTGAGGAGAGGTC
Band lengths:
184-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types