BtaINT0017895 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027629 | ANK1
Description
ANK1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A2VE25]
Coordinates
chr27:36262622-36263138:-
Coord C1 exon
chr27:36263073-36263138
Coord A exon
chr27:36262756-36263072
Coord C2 exon
chr27:36262622-36262755
Length
317 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATT
5' ss Score
5.41
3' ss Seq
GTCTGAACTGCTGTCTCCAGGTG
3' ss Score
7.96
Exon sequences
Seq C1 exon
ATCGTTCGCAAAGTCGTTCGCCAGATAGACCCGTCCGGAGCCGATGACACCCAGGAGCTTGAGGAG
Seq A exon
GTGATTTCCAAGGGGCCCCTGGAGGACCCTAGTGAGATGGAGGCGGACATTGATTCCTTTATGACTCACGCCAAGGTACTGCTGGGCCCGCGGCCTCCCAGGCCCTCACCCTTCAGAGGGCCCGGCCCGTGACCTCCGCTGACCCCTGCGCCAGCCCGCCTGGGGCTCTCCTCTCACCTGTCTGCCGGCTCCTCCTCGAGCCTCCTGGCGCTGGTGGCCCCGCTCCCGCCGCCTCCGTAGGGTGCCTGTCCTCTCTGGCCTTCCTGCCATCTCTCTGTGTGATCTGTCCTGCCTTCTGTCTGAACTGCTGTCTCCAG
Seq C2 exon
GTGGAGCTGAGAGGAAGTGGCCTGCAGCCGGACCTGATAGAGGGCAGGAAGGGGGCTCAGATAGTGAAGCGGGCCAGCCTCAAAAGGGGGAAGCAGTGATCTCCAGCCCCTCTTGTGGAATGGCCTCTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027629:ENSBTAT00000004244:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTTCGCAAAGTCGTTCGC
R:
CTCCAAAGAGGCCATTCCACA
Band lengths:
200-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]