HsaINT0008072 @ hg19
Intron Retention
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41510744-41519082:-
Coord C1 exon
chr8:41518948-41519082
Coord A exon
chr8:41513273-41518947
Coord C2 exon
chr8:41510744-41513272
Length
5675 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
TCTCTCTTTGTGTCTCCCAGGAT
3' ss Score
10.81
Exon sequences
Seq C1 exon
GTGGAGCTGAGAGGGAGTGGCCTACAGCCGGACCTGATAGAGGGCAGGAAGGGGGCGCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGGAAACAGTGACCCCGAGCCGCTCTCCTTGGAGTAGCCTCTCGGGAG
Seq A exon
GTAACGCTGCCCTTCTCATCCCCTCTGCATGGCCTGGTCTTCAGTGGAGTGGCTGCTCCCTGTCTCACCCTATCCCCTCCCAGCCACCCCAGCATGATGTGGGACAAACAACTTGTTGTTGTGTCTCGAGGCAGAGATTCTCACTTCCCAACCCTGCTAACAGTTGGCTCTGAACCCCAGCTTCCTCATCAAGGAAACAGAGTTAATAATATCCACTTATCAGGGACCGCACGGTTTTGTAAGAATGCCTTTTGGGCCGGGCACAGTGGCTCATGTCTGTAATCCCAGCATTTTGTGAGGTCGAGGCAAAAGGATTGCTTTAGGCCAGGAGTTCAAGACCAGCCTGGGCAACAGAGCAAGACCCCATCACAAAAAAAAGAAAAAAAAAAGCCAGAAAGAAAAAAATGCTCTTTGAAAAGTAAAAGCACTCTGTAAATCTAAGTGGTAATATTATCTTGGAAACCAAGCAATGGGGATCTAGAAAGCAGTGGACAGGGCATTGAAGAGGACAGGAGAGTTGGTCTGGGCTGTGATGCTTCAACATAAGAGCTCCAAGACTGAGGACTGGACTGTCTCTTGAACCTGGAGCCCAGCTACAGTTCTCACCAGGCCAAGGCTTAGCTTCTCTTTGGTGTTTTGTGAAACACGTTGCTCCCTTGCTTTCTAGGAAAGGGCTGAGCCGACAGGCCTAAGGGGTGGACGACGTGCTTTCTGCAAGTCAGGAGACCGTCAGGGTTGGGGCCGGGGCCTGGGCTGTGGTGCATGTGTGTGAGCATGGGGCAGTGTGGCCACAGAGCAGGGGCATGCCGTGCCGTGCCGTGCCATGAGGAAGGGACATGAAGACGCTGTGCGACCATCTCCAGCAGGTGTGTGTGGTGCTGGGGGCTTCAGCGGCCGGCTCTGATCTCCATCCTCCCTGGGGCATCCTGTACTGAGCTGCCCCGAGGCCCTTCATGCTGCCCAGCTCGGGGCAGCTCAGTACAGGATACTCGGGGTGGGAGTCAGCAGGAGGTGAGGGGGCATGGTGGCCCCAGTGCAGCACTAACCAGGCCGTTACCATTCACACCCCAGGGCCTGACTCTGGGACCGAGCAGCAAGGAGGCTCTAGCTTTCTGCATTCGGCAAAAATCAGGGCCCGCTGCCTCCTGAGCCACCAAAAGTGCTGACTCTGGGCTTCCCAATATATCTCAGCACTTGGGCAAAAAAGAGGACTGGCAGATCCAGTTATAGGATAAAATTAGACCTGACACCTCAGCAGCTTAAGGAGGTCACCGTGTTAACCCCTGCACTGCCAGGGGTCCCACTAGGCTGCTGGTTTAGAAGACTCTGAGTAGCTGCTGTTGGGTCCTGGAAAGAACCCAAAGATGCAAATAATGTTTAAAAGCAGCAAAGGGAAAGGAAAAGTACACTTTTCTGACTTATTTTTCTTATGGTAGCAGTGGCGGCTGTGGCTTTAAATTTCTCTTTGGCTCAGGCTCTATGGATGCTCCTGAGTGGGAGAGAGGCAGCCCGAAAGCCAGGCTAGGGGGAAGGAGGGAGCCTTGAATTTCATTTTAATTTGCCGTAAGTGATCTGCAATGTGGCTGAAGCCCCCCAACCTCAGGTGATTAAGGACCGGACCACACTAGCATGGGTGTCAGAAACACGGAGCAGCCTGGCTCTGGGACAGCACTTGGCCCTCTGTCAGTGACAGGCACAGGGACAAGTGTGAGGGTGGCAGGGGGGTGGGGCGGTGGGGCGAGAGCAGTGGTGAGGGAGAGGCGGAGAAAAGCTCCTGCCAAAGTCCCAGAGGGTTAGGGGACAGCATTAAATGCCCTACCCTCCCAACCAGGGCAAAGGCTACAGAGAAGACGGTTGAGGGCCCAAAGGCTTCCTAATTTACTATCCGCATCCCCGACAAGCATGTACAGTCGATCCTCATCATTCACGGATTCTGCATTTGCGAATTCGTCCACTCGCTAACATTTATCTGTAGCCCCAAAGCTGGCACTCACCGTGCTTTGGCTCATTCATGGACACACACACAAGGGCAGAAAGTTTGAGTCGCCCAACCCGTGCAATCCCAGCTGAGGATGAACAATGCCACACTCTGCCTCTGTGCCTCATACTATAAATAAGTGTCCTCCTTGCAGCTTGTGTAGTGCCACATTTTTCACATTTTTGGTTTCATTGTTTAGAATGGCCCCTGAGGGCAGTGCTGAAGTGCTGTCTGGTGCGAAGTGCAAGAAGGCTGGGATGTTCCTTAAGGAGGGAATGGACATCAGATAAGCTCTGCTCAGGGATGAGTTAGAGTGCTTGTGGTGGTGAAGTCAGTGTTAATGAGTCAACCCTATATATTACATAAGGCGTCTTGAAACAGAAACGCATTTAACACAAAGTTATGTATTCATCAGTTGACCAAAATATTGTGGCCAGAGGCTCATGGGAGCCTAACCTTGTATTTCCCTTAGGAGCAGTGGTTCAGTATTTGCTAATTCCGTGTTCACAGCGACTATTTATTTATTTATTTATTTATTTATTTATTTATTTATATTTTGAGAGGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACTATCTCGGCTCACTGCAACCTCCATCTCCCGGGTTCAAGTGATCTTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACCCTTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTCGTCTCGAGCTCCTCACCTCAAGCAACCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCACAGCCTCAAACAGCGACTAATTTATAGAACAGAGCTATGGCAAATGGCTGTATTTGTTTCAGAGAGTGAAAGCTGGAGCTTGTGAGTCTAGAATCAAGGCCTCCTCCTGCTTCCAGGTTGTATGGCCTTAAGTCATTTAACCGCCCTAAGCTTCAGTCTCCTCAAGGGAGGATGAAAATGTCCCTTTCGAATGTGCTACACTTCAAGAAAAAGGTTTAGAAATAATAATGGTAACTGTGAGCACTGATGTGAAGAGAGTAAATAAGAACATATATGCTCTGGGACTCAAACAATTGCAGGTCTTGTTTGTAGTGTGACTCGGAGCAAGTCAAATGACTTCCCTAAGCCTCAGGTTCCTTAGCCATAAACTAGCAATAATGCCAGCATTTCCCTTGTAGGATGGTTATGATGGTTGCTGAGTTTATGTTTGTGAAAGGGCTGTCTAGGGCCGGGCATAGTGACTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATAATTTGAGATGAGCCTGGGCAATGTGGTAGGACCCTGTCTCTACAAAAAAAGTTTAAAAATTAGCTGGACATGGTGGCATACACCTGTAGTTCCAGTTTCTTGGGAAACTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTATACCACTGCACGCTAGCCTGGGCAACAGGGCAAGACTCTGTCTCTAAATGAAATAAAAATAAAGAATGAAAGAGACTCTTTTCTAAGCTTTTGAAAGGTGAGGGGACCCAGGAGAAGAGGCCAGAACAATGCAGGAGTCCTGGGCAGAGTGAGGTGGCCTAGGTCCTCATCTCACCCCTGCTCTTGCCACTGTGCCTCTAGAGTCTCAGTTTACCAAGGGATGAAATGGGCAGTCATGCCAGCATGATCTCTGAGGTCTGAACTTTCTCTTCTGCTCAGTGCCTGGGCGGTAAAGTAGATGGGAGATCCTAGCCTGTCTTTCCCAGGCTGCATATTCCATGATGGTCTCTTATTTGAGGAGCACTTCTTGGGGCAGGCACCGTGGGGAGCACCAGGAGGCTGTTCTTGCCCTCAGTGTTTCTAATCTAGTCAGGGAAATATGCAGACATCAAAAAGCACAGATGGACAGAGACGGTAACATTTCTAGAGAGCCAAGTAATTGTTTGCATTCATACAATGCTAAGCACCTATGTGTCTTAGCTTTTTTAAACATCACACCTCTCTAATGGGTAGGCCCTATTACTGCCCTCATTTTACAGCAGAGAAAACTGACTCACAGAGCAGGTAAGGCACTTGACCGAGGTCAGGCAGCATGGGACTTGAACCCGGGTGGTCTGGCTCCAGAGTTCATGCTCTTACCCACTCGACTCTGCCATCTCCTGAACAGAAAAGGCAGCTTTTTTCTTTTTTGTATTTTGTATTTTTACAAAATACAAAAGGGAGAGCTTCCAGAGTGGAGAGGGGCCTGCTCCAGGAAGGATCAGGAAGGTTTTGTGGGGTGGAGGTGTTGAGGGCGGCAGGCAGAACCTCTGCAGAAAAGAGAATGGAAGGCAGCCTTGACAGAAGCGTGACCGAAGGCAGAGAACAGGAGGGTAGAGCGTGTTCAGAGGCTTAGAGGAGACAGTCAGACTTGGCCGATGTGATGGCCCAGCAGTGATGAAAGCATCTTCCCTCTACGGTGGCAGCACTGTCCACCCACTGCAGCAGCAGTTCCTGGCTTTACAGTTCTACAGCAGCCCCTGGCAAGGAACCTGGCACCACCCTCCCATCCCTGGGGAACCACCCAAGAGCTGAGTTCTCCCTACTCCCTTCCAACACTCCTCCCCAACCCCTTCACCTGGAGGACCCAAAACAGCTCTATGTCTGGGGATGGCTCCACCTCCGAATGAGCTCCTGCCTCCCTGTGTCACTTCCCACCCTGCCCAAGAGATTGTCACCTCCTCCTTATTGAAGCATCCTCCTTTCCCCAGTGGTCCCAGGGCCCCTGCAGATAGAACATGAGTGGCTGGTCTTGAAAACATGGAGTTTTCACCCCAGGTTGGAGGCTGGAGGCCCCATGGGGGCAGGAGAGGTTTCTCACTGCGAATCCCAGGCTGAAGAATGTGGGCTTAGTTCCTCCAGCAAAGCTGCTCTTTTCCAGCCTAAGACTCAATACAGGAGGAGGAGAGGAGGATGCATCTGCTTTTCAGAGATCTCTGTCCATCTGAGGGGCATGGGGAGAGCAGCCAGAGGCAGCGGTCAGGAAGTGCTGTGGGCCAGAGCTGAAGGGGAGCTGTCACCCTTGAGGCATGAGCTCCCAAGGCCAGGGAGCACATCCGCTCCATCCCTGGGTTCCCAAGGCTGGCGCATGGCGGACATCAGTGCATGTTGGCAGAGCTGAACTGAGAAAGTGAAGGCCTCACCTAGCCTCACCTAGCCCCTTCTTGGCACAAGCCCTGGCTCAAGAAAAATGGCTCTTCCTAAGTACAAGGATCTGCTGGGGGATGTCTCCCCAGGTGACCACGTAGGCACGGGGGCCTCTGCCCCTCTCCAAGGGCACAGAGCACAGTGCTCTCCTTGGCCCATACAGAGAGGCATCCTGGAACACTTGCACACTCAGAAGGAATTCATGAGGCCTGGGTGGCGGCTCTGAGGAACAGCCTCTGCATAGGGAGCAAGAGAAGGAGGGCGGCATCTCAGGAAGTCGGGCTGCAAGTGCAGCACCCTCAGCACATCGCCCTGCCTGGGGAGACTGCTTTTCCTGAGTCAGATTCGGCCTGAGCTGCCAGCACAAAACTCTGTGTGTGGGGTTTTTGCTGGACGTTGCACTTTTGCATTCTAAGTGACTCCTTCTCTCTTTGTGTCTCCCAG
Seq C2 exon
GATCACACCTCGACACCCAACCCCTGAACCCCACACACTCTGCCATGCACACAGGAGGAGAGCTGGACCTGAGGGCCACCGCAGCGGTGCACACATTCCTCTGGGCTGACGGCATGACCTCTGTAAGGGACTCCTGCTAGTCCCCTCTTGGCATGAATGACTGACTGTAGACGCATGACCTCCAGGCTTCAATCCTGCCTCTTGCAATGACAGCTGATCTGTCGGAACCAGGACACAAAAGCAGCAAGAAGCGGGGAGAGAGAGGGATAGAAAACAAGCGCAGGAGAGCCTGCGAACGCAAAAGTGAATGAGGGCTTTTTGTGGCTGGGGATGGGTTTTGGTTTTGGGGTTTTTTTTTTAAATTGTTTTGACTTCGTACAGGGTACTTTTTCCCAACCTCATCTGTCAGAAATCCATGTGGGCTTCCTGGAAAGAAAAAAAAAAAAAAGAAAACTAGGCATGAAATCAGTTTAACACCTTAATCTTAAGCCATGTCCTCATCTGCCCACCCTCCCCAACCCACATACCTCCATTCCACTTGTGACACCCCCTCGACTCCCTGGTGACGCTCCTCCCAGATCGCTCTACATGACATTCAGGACACACACACACACACACACACACCACTCGCCTCCACTGAATCTACACACAGATTTTACTGTGACTTCTGAAGCTGTATAGACTCTGCTGTGGATAAATTGGAATTTTTTATGTTGTCTCTCTCTCTGCCAATTTCAATACGAATCATCTTCCAATGGAAAATCATTACCTTGAAGAGTGCATTCGGGGTTCCTTGTGTTAGGGACTTAAGAATCTGAGGCGAGGACCCCCAGGCTTACCTGTAGGACTCAAAGGGAGCCAGGACCCCATCTGAAAGGGTCTCCTCTCTCAGTTGGGGGACAGGCCGGTGGCTGACCCAGGATTGCACCAGCATGTCCATAGAGAAGAGGTTTTCTATGTCTTCAAGCACTATATCATAGTCCGTGTTCAAAGTGTAAACTGTACAGTAATCAGCCTTGTGTATATGAAAAACAATAAATACTATGCAAACCAATAGAAACATTTAGCAGTACGTACAGAGCCTGACAGCGCAGCTCCTGAGGACTTCTGCGGCTGCAGGAGAAGGAGCTGTGGCCTGTCTTTCAGTGAAAGAGGAAGGAAAGGAGTAGGGCTAGTGAATGTATCTGCCAGGTCTTAGAAGTCAGGACCACCCAGGGTCTCCCAGAGTGAACTTGGTGCTCTAAGTCCAGGCAGCCTGCAGGCTGGGGACCCTGGGTGCAGGTGCCAGGCTCGAGGCTGTTCCCTGTCCTGCCTCAGTGCCTCCCCTCTGCCCAGCCCCTGTGGCCTCTTGGAGAGGCGAGCCAGGGGGCTCCCCGGACCGCATGGCCGGTGAGAGTAGAGTCGGAGGCGGAGAGCCTGGACGCCCAGAGGCCGGGGCCAGGCTCTGGGTCAAGGCAGGAAGGAGACAGACAGCTGGCAGTTCCTCGCCTCGGTGCCATCAGGGAGGAGCCTTAAGTTCCACTAGAGCCTCCGGCCCAGGGAGGCCAGAATCAGCACAATCCCGGCCCCGCCCTCGCGGCGGGCGCCCCCAGGGCCAGGAGAGAGAGACAGGGCTGGCTCCTCTCGCCCCTGGAGCCGCGGTGTGGACGGCCCGGCCCCGTCCGCCCCGCCGCTCTGCGGGAGTGTCCTCGGGACACACTTAAACCTTCCAAGTAGCACAGAAGCCCCCTCCACGTCAGAGGCCCCCTGGCCGCGGGGCCTGTGAGCGGAGAGGGGCCCTGCTTCCCACACAAATCCGCCCCGGTGCACCCCCGGCCAGGCAGGCCCCGGGGCGGCCTAGGCGCCTTGTCGGCCGGGGGTGGGGCTGCTTTTGCTTCCTTTAGAGGGGCGGGCAGGGAGAGGAAGCTCTAGCTCCGGGCCTGAGTTTCCCCGAGGCTGCGTCGGAGGAGCTGCAGGGCGAGCCCGGACGGCTGCCGTCTCCGCCAGAGGCCACCCCGGCCCGGCCTCCAGGGCGCAGAGGCGCCCCCCTCCATCCTCCCCCATCCCGGGGGCCACGGCAGGGGGGCCGCACAGCGCGGCTGGGACCGATTCGGTGACGGCCCAAGGAAGCTGGGCTCAGGGCTCGCCTCTCCCGCCTCGATCCTGCACCTTCCTCTCCCAGGTCGCTGCTGCAGCCAACCCAGTAGCCCCCTTAGCGCCCCCGCGGACCCCGCAGCTCCAGACTCCGCTTTGGCACCTCTGCTCCGGCTGGCATGGCTGCACGCTCCGGCTGCTAGTAGGAGCCGTTAGGGGAGGAGTTTGGGGTCTCCACACGATGCCTAGAGAATGCTGCAGTCTGCACATTAGACGCTTTTTAGAAGTTTTGAAATTACCTTGATTTTTTTAATTGTTATGAAAATGGATCTTTTCTTGACTCTCCCACATGCTCTGTTATGGGAGAGAATCCCCTACCCTACTCTGATGTATAGACCATTCTCCCTTCACCAGCCGAACCAATGTCAAAATTAATAAAGAAATGGACTAATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-ANK1:NM_020478:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)