GgaEX0004704 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2611579-2614895:-
Coord C1 exon
chr22:2614734-2614895
Coord A exon
chr22:2614316-2614439
Coord C2 exon
chr22:2611579-2613782
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGTGGCTCCCTCAGGAG
3' ss Score
8.81
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCATCCGGAAAGTGGTGCATCAGTTGGACCTCGACACGGATGACAGGAAGGAGCATGAGGACTTGATTCTGGAGGGCTCCCTGCAGGAGCCCCAAGACCTGGAGGCAGAGGCTGATCACTTCATGTACTCCATCCTACAGCGGGACGGTCTGGGGGCCAAG
Seq A exon
GAGGAGGTGCAAGTGCGTGTCCCAAAACTGGAAGTCTCCGGGAGCAGGATGGGGGCTCAGATAGTGAAACGAGCCAGTCTGAAAAGGGGGAAGCATTGACCCCCCTCAAATGGCCTCTTTGGAG
Seq C2 exon
GATCTCACCTCAACACCAAACCACTGATCTCCACACCAACCTGAGAAGAGAGGAGAGGAAAACAGAGATTGGAGGGAAGCAGGGCTGGCTGTACATGTTTCAATAGGCTAATGGCATGATTTCTGTACGAGATACTTACCGTCCTATCCGCATGACTGACTGACTGCAAGACGCATGAGCTACAGTACTTCCAGCAGACAGAGGGACCCTGTCCCTGCCTTGCTGCCATCAGGAGCCTAAAGACAGCAGCACGCACAAGGGGTATCCTTCGGCTCCTCTGGGAGGCCAGAGCTGGACTGACAGCAAATGAGAGGGGAGAAGAATCCGCCCTCGCACGTCCACCTGTGTCACTACATCCCTGTGCAGTGCTCCAGTGGCAGGAAGGAGGCTGGGGCTGCTCACTGAAGGAGAAGAGGGGCTCTATCCCCATCACCATTCTTGCCTCTGCTGGACTTGCTTCTCATCCCTCAGTGAGTGCTGGGGCAGGGGGAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.062 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGTTGGACCTCGACACG
R:
AAACATGTACAGCCAGCCCTG
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]