MmuEX0004885 @ mm9
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:24251636-24260969:+
Coord C1 exon
chr8:24251636-24251701
Coord A exon
chr8:24252068-24252192
Coord C2 exon
chr8:24258753-24260969
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGATGCTGTCTCCAGGTG
3' ss Score
9.95
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATCATTCGCAAAGTCGTCCGGCAGGTAGACTCGTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
Seq A exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAGGGCAGGAAGGGGGCTCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGCAAGCAGTGACCTCTCCTCAAGTAGCCCCTTGGGAG
Seq C2 exon
GATCACACCTCAACACCCAAACCCTGAACTCCACACACTCTGTCATGCACACGGGAAGAGACCTGGACCAGAGGGCTACTGAAGGGTCGCACGTGTTCTGAGCTCCCCGGCATGACCTCTGTAAGGAGTTTCCTTTAGTCTCCTATTCGCATGAATGACTGGCTGTAGACGCATGACCTACAGTCTTCAGTCCTGCCTCTAGCGACTATGGATCTCTGTGGGAATCAGGACAAAGGCCTCGAGAGAAGGGAGAGAAGAAGGGAGAGGATAGCAAGCCCCAAAGAGCACACGGGTGCAGACACGAATAATAAGGGCTTTACTGTGGCCGGGATGGTTGATCTGTTTGTTTGCTTTTTGTTTTGATTTTTTGACTTCAACCTCATTTGTAAGAAATACACATAATCTTTCTGGACCGAGGAAACCGGGAACGGCGTGAAATCAGTTTAGCCCATTGTCCTACATCCTCGTTGTACCTGCACACGCCACATGCCACTTGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.597 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATTCGCAAAGTCGTCCGG
R:
TAGGTCATGCGTCTACAGCCA
Band lengths:
246-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: