Special

MmuALTD0001300-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:24251636-24252192:+
Coord C1 exon
chr8:24251636-24251701
Coord A exon
NA
Coord C2 exon
chr8:24252068-24252192
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATT
5' ss Score
5.41
3' ss Seq
GTCTCTGATGCTGTCTCCAGGTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
ATCATTCGCAAAGTCGTCCGGCAGGTAGACTCGTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
Seq A exon
NA
Seq C2 exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAGGGCAGGAAGGGGGCTCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGCAAGCAGTGACCTCTCCTCAAGTAGCCCCTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-50-58,51-58-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.621 A=NA C2=0.597
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000113571





     
                   









    
Main Skipping Isoform:
ENSMUSP00000106313





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000081051, ENSMUSP00000106316, ENSMUSP00000112850, ENSMUSP00000112966, ENSMUSP00000113495, ENSMUSP00000113531, ENSMUSP00000133322
          









    
Other Skipping Isoforms:
ENSMUSP00000033947, ENSMUSP00000081050, ENSMUSP00000113656, ENSMUSP00000117966
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr8:41661876-41661941 
ALTERNATIVE
HsaALTD0000306-1/3
(ANK1)
Human
(hg19)
chr8:41519394-41519459 
ALTERNATIVE
HsaALTD0000306-1/2
(ANK1)
Rat
(rn6)
chr16:73681809-73681874 
ALTERNATIVE
RnoALTD0002684-1/2
(Ank1)
Cow
(bosTau6)
chr27:36263073-36263138 
ALTERNATIVE
BtaALTD0002030-1/2
(ANK1)
Chicken
(galGal4)
chr22:2614831-2614832 
Chicken
(galGal3)
chr22:2665100-2665101 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATCATTCGCAAAGTCGTCCGG

				
R: 
GGGCTACTTGAGGAGAGGTCA

				
Band lengths: 
183-258

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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