BtaALTD0002030-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000027629 | ANK1
Description
ANK1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A2VE25]
Coordinates
chr27:36255859-36263138:-
Coord C1 exon
chr27:36263073-36263138
Coord A exon
NA
Coord C2 exon
chr27:36255859-36256011
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATT
5' ss Score
5.41
3' ss Seq
TCTCTCTGTGTGTCCCCCAGGAT
3' ss Score
12.07
Exon sequences
Seq C1 exon
ATCGTTCGCAAAGTCGTTCGCCAGATAGACCCGTCCGGAGCCGATGACACCCAGGAGCTTGAGGAG
Seq A exon
NA
Seq C2 exon
GATCACACCTCGACACCCAACCCTTGAAACTTCACATACTCTGCCACGCACCCAGGAGAGAGAGCTGGGCCCGGAGGGCCCCGCGCACGCGTCCCTGGGAGGCTGACGGCATGACCTCTGTAAGGGACTTCCTTAAGTCACCTATTCGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027629-5-7,6-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGTTCGCCAGATAGACCC
R:
CCTTACAGAGGTCATGCCGTC
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development