BtaEX0003404 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027629 | ANK1
Description
ANK1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A2VE25]
Coordinates
chr27:36255859-36263138:-
Coord C1 exon
chr27:36263073-36263138
Coord A exon
chr27:36262622-36262755
Coord C2 exon
chr27:36255859-36256011
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTCTGAACTGCTGTCTCCAGGTG
3' ss Score
7.96
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATCGTTCGCAAAGTCGTTCGCCAGATAGACCCGTCCGGAGCCGATGACACCCAGGAGCTTGAGGAG
Seq A exon
GTGGAGCTGAGAGGAAGTGGCCTGCAGCCGGACCTGATAGAGGGCAGGAAGGGGGCTCAGATAGTGAAGCGGGCCAGCCTCAAAAGGGGGAAGCAGTGATCTCCAGCCCCTCTTGTGGAATGGCCTCTTTGGAG
Seq C2 exon
GATCACACCTCGACACCCAACCCTTGAAACTTCACATACTCTGCCACGCACCCAGGAGAGAGAGCTGGGCCCGGAGGGCCCCGCGCACGCGTCCCTGGGAGGCTGACGGCATGACCTCTGTAAGGGACTTCCTTAAGTCACCTATTCGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027629_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.281 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTTCGCAAAGTCGTTCGC
R:
TCATGCGAATAGGTGACTTAAGGA
Band lengths:
219-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development