RnoEX0009330 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73673648-73681874:-
Coord C1 exon
chr16:73681809-73681874
Coord A exon
chr16:73681396-73681520
Coord C2 exon
chr16:73673648-73675332
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGATGCTGTCTCCAGGTG
3' ss Score
9.64
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATCATTCGAAAAGTCGTCCGACAGGTGGACTCCTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
Seq A exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAAGGCAGGAAGGGGGCTCAAATAGTGAAGCGGGCCAGCTTGAAAAGGGGCAAACAGTGACCTCTCCTCAAGTAGCCCCTTGGGAG
Seq C2 exon
GATCACACCTCAACACCCAAACCCTGAACTCCACACACTCTTGTCATGCACACGGGAGGAGACCTGGACCAGAGGGCTACTGAAGGGTCGCACGCGTTCTGAGCTCCCCGGCATGACCTCTGTAAGGAGTTTCCTTTAGTCTCCTATTCGCATGAATGACTGGCTGTAGACGCATGACCTACAGTCTTCAGTCCTGCCTCTAGCGACTATGGATCTCTGTGGGAATCAGGACAAAGGCGGCGAGAGAAGGGAGCGGATAAGGAGCCCCAAAGAGCACACGGGTGCAGACACGAATAAGGGCTTACCGTGGCTGGGATGGTTGATCCGTTTGTTTGCGTTTTGTTTTGATTTTTGACTTCAAACTCATTTGTAAGAAATTCACACGATCTTTCTGGACCGAGGGAACGGGAAACGGCGTGAAATCAGTTTAGCCCTTTGTCCTCGTGTACCAGTCTCCTATACCCCCCCACACACCACATGCCACTCGTCCCCGCCCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=0.656 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAAGTCGTCCGACAGGTG
R:
GTAGGTCATGCGTCTACAGCC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]