GgaEX0004704 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2663951-2665103:-
Coord C1 exon
chr22:2665003-2665103
Coord A exon
chr22:2664585-2664708
Coord C2 exon
chr22:2663951-2664051
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGTGGCTCCCTCAGGAG
3' ss Score
8.81
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACTTGATTCTGGAGGGCTCCCTGCAGGAGCCCCAAGACCTGGAGGCAGAGGCTGATCACTTCATGTACTCCATCCTACAGCGGGACGGTCTGGGGGCCAAG
Seq A exon
GAGGAGGTGCAAGTGCGTGTCCCAAAACTGGAAGTCTCCGGGAGCAGGATGGGGGCTCAGATAGTGAAACGAGCCAGTCTGAAAAGGGGGAAGCATTGACCCCCCTCAAATGGCCTCTTTGGAG
Seq C2 exon
GATCTCACCTCAACACCAAACCACTGATCTCCACACCAACCTGAGAAGAGAGGAGAGGAAAACAGAGATTGGAGGGAAGCAGGGCTGGCTGTACATGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'50-49,'50-48,51-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCCCCAAGACCTGG
R:
AAACATGTACAGCCAGCCCTG
Band lengths:
178-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]