HsaALTD0000493-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28633]
Coordinates
chr9:137612896-137613510:+
Coord C1 exon
chr9:137612896-137613006
Coord A exon
chr9:137613007-137613226
Coord C2 exon
chr9:137613413-137613510
Length
220 bp
Sequences
Splice sites
5' ss Seq
CTGGCACAG
5' ss Score
-3.84
3' ss Seq
TGGCCCTGTGGCCACCTCAGGCC
3' ss Score
4.33
Exon sequences
Seq C1 exon
CCATCCGGGTGACCTGCATAGGTTCCTGCGGGGTCTCCAACAAGGCTAATGACACAGCGTGGGTAGTGGAGGAGGGTTACTTCAACAGTTCCCTGTCGCTGGCAGACAAGG
Seq A exon
GTAAGTTTGGGAGCCAGTTCCCGAGTGGTGACCCCTGGGGGCAGCCCTTGGAGTGGGGCCTGTCTGTCCTGTCCTCCCCCTTTCCTAGATCTGCCTCTTGGATCTGGCACTGGCCCATCTTGTCCCAGGGTTGTGGGCCCTGATGGCTTTCTCATAGGCGCTGGGTGGCTGAAGGGGCCACCTCCCCCTTGTGCTGGATTTGGGTGGGCTCTGACCCCTG
Seq C2 exon
GCCACCTCAGGGGGGGACTGCCCCCCACCTCCCTCCTGTCTCTGCAGGGAGCCTGCCCGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-2-5,3-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=PD(58.0=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATAGGTTCCTGCGGG
R:
AGGAACTGGAAGGGGAAGCTG
Band lengths:
188-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development