HsaALTD0000493-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:28633]
Coordinates
chr9:140507348-140508016:+
Coord C1 exon
chr9:140507348-140507458
Coord A exon
chr9:140507459-140507462
Coord C2 exon
chr9:140507916-140508016
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAAGTTTGG
5' ss Score
-7.16
3' ss Seq
CCTCCTGTCTCTGCAGGGAGCCT
3' ss Score
-9.46
Exon sequences
Seq C1 exon
CCATCCGGGTGACCTGCATAGGTTCCTGCGGGGTCTCCAACAAGGCTAATGACACAGCGTGGGTAGTGGAGGAGGGTTACTTCAACAGTTCCCTGTCGCTGGCAGACAAGG
Seq A exon
GTAA
Seq C2 exon
CCTGCCCGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTGGTGAGAGCCCAGCCTGGACAGGCCTGGTGATGACCAACTGGTCCTGGGAGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-4-9,5-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTAATGACACAGCGTGG
R:
GAACTGGAAGGGGAAGCTGTG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)