HsaALTD0000536-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53931199-53937232:-
Coord C1 exon
chr12:53937114-53937232
Coord A exon
NA
Coord C2 exon
chr12:53931199-53931336
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
3' ss Seq
TCATTTTTCTTTCACAACAGGCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
ATCAAACGCCTACTCCAACTAGATTCCTGAAGAACTGTGAGGAGGTGGGACTCTTCAATGAACTAGCTAGCTCCTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAGAAAAAG
Seq A exon
NA
Seq C2 exon
GCTGCTGCTGGGCCCCTTGACATGTCTCTGCCTTCCACACCAGACATCAAAATCAAAGAAGAAGAGCCAGTGGAGGTAGACTCATCCCCACCTGATAGCCCTGCCTCTAGTCCCTGTTCCCCACCACTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653-4-4,5-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTGAGGAGGTGGGACTC
R:
GGTGTGGAAGGCAGAGACATG
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)