HsaALTD0000536-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53931199-53937232:-
Coord C1 exon
chr12:53937114-53937232
Coord A exon
chr12:53937081-53937113
Coord C2 exon
chr12:53931199-53931336
Length
33 bp
Sequences
Splice sites
5' ss Seq
GTGGTATTC
5' ss Score
0.84
3' ss Seq
TCATTTTTCTTTCACAACAGGCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
ATCAAACGCCTACTCCAACTAGATTCCTGAAGAACTGTGAGGAGGTGGGACTCTTCAATGAACTAGCTAGCTCCTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAGAAAAAG
Seq A exon
GCAAGAAGCAGGACTGTTGCCAAAAAACTGGTG
Seq C2 exon
GCTGCTGCTGGGCCCCTTGACATGTCTCTGCCTTCCACACCAGACATCAAAATCAAAGAAGAAGAGCCAGTGGAGGTAGACTCATCCCCACCTGATAGCCCTGCCTCTAGTCCCTGTTCCCCACCACTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653-4-4,5-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTGAGGAGGTGGGACTC
R:
GGTGTGGAAGGCAGAGACATG
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)