HsaALTD0000655-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171483675-171484998:+
Coord C1 exon
chr1:171483675-171483769
Coord A exon
chr1:171483770-171483784
Coord C2 exon
chr1:171484873-171484998
Length
15 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTTTTTAAAAAAATCTATAGGAA
3' ss Score
5.58
Exon sequences
Seq C1 exon
AACACCAGAAGTGCCACCAGCACAGCCAAAACCTGGGGTTGCAGCTCCCCCAGAAGTAGCACCTGCTCCCAAATCATGGGCCAGTAACAAGCAAG
Seq A exon
GTGGGCAAGGAGATG
Seq C2 exon
GAATCCAAGTGAATAGTCAGTTTCAGCAAGAATTTCCCAGCCTGCAGGCAGCTGGGGATCAGGAAAAAAAAGAAAAGGAAACAAATGATGACAACTATGGACCTGGACCCAGTTTACGTCCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523-4-6,5-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(22.6=100)
A:
NA
C2:
PF070016=BAT2_N=PD(19.5=74.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGCTCCCCCAGAAGTAG
R:
CCTGCAGGCTGGGAAATTCTT
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)