MmuALTD0011117-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:164650612-164651670:-
Coord C1 exon
chr1:164651576-164651670
Coord A exon
chr1:164651561-164651575
Coord C2 exon
chr1:164650612-164650737
Length
15 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GTTTTTGAAAAAATGTTTAGGAA
3' ss Score
3.2
Exon sequences
Seq C1 exon
AGCACCAGAAGTGTCACCAGCACAGCCCAAACCTGGGGTTGCAGCTCCCCCAGAAGTAGCACCTGCTCCCAAATCATGGGCCAGTAACAAGCAAG
Seq A exon
GTGGGCAAGGAGATG
Seq C2 exon
GAATCCAAGTGAATAGTCAATTTCAGCAGGAATTTCCCAGTCTGCAGGCAGCTGGAGATCAGGAAAAAAAAGAAAAGGAAGCAAATGATGAAAACTATGGACCTGGACCCAGTTTACGCCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-5-8,6-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(22.2=100)
A:
NA
C2:
PF070016=BAT2_N=PD(19.8=76.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGCTCCCCCAGAAGTAG
R:
CTGCCTGCAGACTGGGAAATT
Band lengths:
108-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: