HsaALTD0001112-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000157445 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:15460]
Coordinates
chr3:55107472-55107886:+
Coord C1 exon
chr3:55107472-55107582
Coord A exon
chr3:55107583-55107586
Coord C2 exon
chr3:55107806-55107886
Length
4 bp
Sequences
Splice sites
5' ss Seq
TATATCCTT
5' ss Score
-24.41
3' ss Seq
GCCTTAACTACAGTCAACATAAT
3' ss Score
-11.57
Exon sequences
Seq C1 exon
GTCCTTTGTCATCCAGCAAATCCCAAGCAGCAACCTGTTCATGGTGGTGGTGGACAGCAGCTGCCTCTGTGAATCTGTGGCCCCCATCACCATGGCACCCATTGAAATCAG
Seq A exon
GTAT
Seq C2 exon
AATGAATCCCTTAAGTGTGAACGTCTAAAGGCCCAGAAGATCAGAAGGCGCCCAGAATCTTGTCATGGCTTCCATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157445-48-52,50-52-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCATGGCACCCATTGA
R:
AGCCATGACAAGATTCTGGGC
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)