HsaALTD0001112-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000157445 | CACNA2D3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr3:55073445-55073859:+
Coord C1 exon
chr3:55073445-55073555
Coord A exon
chr3:55073556-55073557
Coord C2 exon
chr3:55073779-55073859
Length
2 bp
Sequences
Splice sites
5' ss Seq
GGTATATCC
5' ss Score
-11.78
3' ss Seq
GCCTTAACTACAGTCAACATAAT
3' ss Score
-11.57
Exon sequences
Seq C1 exon
GTCCTTTGTCATCCAGCAAATCCCAAGCAGCAACCTGTTCATGGTGGTGGTGGACAGCAGCTGCCTCTGTGAATCTGTGGCCCCCATCACCATGGCACCCATTGAAATCAG
Seq A exon
GT
Seq C2 exon
AATGAATCCCTTAAGTGTGAACGTCTAAAGGCCCAGAAGATCAGAAGGCGCCCAGAATCTTGTCATGGCTTCCATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157445-111-103,112-103,113-103-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCATGGCACCCATTGA
R:
AGCCATGACAAGATTCTGGGC
Band lengths:
97-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains