HsaALTD0001365-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123884079-123886362:+
Coord C1 exon
chr9:123884079-123884229
Coord A exon
NA
Coord C2 exon
chr9:123886209-123886362
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
GATTTTTTTTTTTAATTCAGTCC
3' ss Score
6.29
Exon sequences
Seq C1 exon
GCGAAGTTACAGAGGCTCGGAGGCGCTTGCAAAAATGTGGCTGTCAGAGAGGGAAGTGCACATGAATTTGAAGACAGCATTAGAAAGCGTTCCGCCCACAGTTTCTCTGTTCTCAACGGCTCAGTTTTAACAGGATAAATTTTAAGTTAAG
Seq A exon
NA
Seq C2 exon
TCCCATATGAAGGCTCAAAAGAGCGGTAAAGAACAACAGCTTGACATTATGAACAAGCAGTACCAACAACTTGAAAGTCGTTTGGATGAGATACTTTCTAGAATTGCTAAGGAAACGGAAGAGATTAAGGACCTTGAAGAACAGCTTACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-17-16,18-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.422
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138511=GAS=PU(35.6=69.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGGGAAGTGCACATGA
R:
AGCTGTTGTTCTTTACCGCTCT
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)