MmuALTD0003008-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35132258-35134111:+
Coord C1 exon
chr2:35132258-35132356
Coord A exon
NA
Coord C2 exon
chr2:35133958-35134111
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTTTTTCCCTGAAATTCAGTCC
3' ss Score
5.19
Exon sequences
Seq C1 exon
GGGAAGTGCACATGAATTTGAAGACAGACTTAGAAAGCTTTGCGCAGCCTGTTTTTGTTCCCCACGGCTCTGTCATAACAGGAAAGATTCGGAGTTAAG
Seq A exon
NA
Seq C2 exon
TCCCACATGAAAGCCCAGAAGAGGGGCAAAGAACAGCAGCTTGACATTATGAACAGACAGTACACACAGCTCGAAAGCCGCCTGGACGAGATACTTTGTAGAATTGCCAAAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-22-26,23-26,24-26-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.369
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138511=GAS=PU(36.3=98.0),PF0163315=Choline_kinase=PU(31.0=80.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCACGGCTCTGTCATAA
R:
CAAAGTATCTCGTCCAGGCGG
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types