HsaALTD0001457-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122159085-122162010:-
Coord C1 exon
chr2:122161947-122162010
Coord A exon
chr2:122161944-122161946
Coord C2 exon
chr2:122159085-122159248
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTAAGTCTG
5' ss Score
-36.19
3' ss Seq
TGGTTTTCATTTGTGTCTAGGTT
3' ss Score
8.51
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGGTTGTGTGAGATCTTCACTCGGATGTTTGCTGACCCTCATAGCAAG
Seq A exon
GTA
Seq C2 exon
GTTTTCAGTATGTTTTTGGAGACTCTTGTGGATTTTATAATAATTCATAAGGATGATTTACAAGACTGGCTTTTTGTTCTTCTCACACAATTACTTAAGAAAATGGGAGCAGATTTACTTGGATCTGTGCAAGCAAAAGTTCAAAAGGCTCTAGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-48-53,49-53-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.045 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.0=100),PF116403=TAN=FE(28.8=100)
A:
NA
C2:
PF123483=CLASP_N=FE(23.1=100),PF116403=TAN=PD(17.8=23.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGATGTTTGCTGACCCTC
R:
AGCCAGTCTTGTAAATCATCCT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)