HsaEX0015472 @ hg19
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122159085-122160239:-
Coord C1 exon
chr2:122160171-122160239
Coord A exon
chr2:122159444-122159446
Coord C2 exon
chr2:122159085-122159248
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGCGGTGGAATTCACAACAGAGA
3' ss Score
3.01
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATTGCTGATTCAGAAGCAGAATGTGAGGATAAAGAAGGAAATTTGTTTCCATCAGAAGTCTCTTGTACA
Seq A exon
AGA
Seq C2 exon
GTTTTCAGTATGTTTTTGGAGACTCTTGTGGATTTTATAATAATTCATAAGGATGATTTACAAGACTGGCTTTTTGTTCTTCTCACACAATTACTTAAGAAAATGGGAGCAGATTTACTTGGATCTGTGCAAGCAAAAGTTCAAAAGGCTCTAGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=FE(23.1=100),PF116403=TAN=PD(17.8=23.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCAGAAGCAGAATGTGAGGA
R:
TCCACAAGAGTCTCCAAAAACA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)