HsaEX0015472 @ hg38
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:121401509-121402663:-
Coord C1 exon
chr2:121402595-121402663
Coord A exon
chr2:121401868-121401870
Coord C2 exon
chr2:121401509-121401672
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGCGGTGGAATTCACAACAGAGA
3' ss Score
3.01
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATTGCTGATTCAGAAGCAGAATGTGAGGATAAAGAAGGAAATTTGTTTCCATCAGAAGTCTCTTGTACA
Seq A exon
AGA
Seq C2 exon
GTTTTCAGTATGTTTTTGGAGACTCTTGTGGATTTTATAATAATTCATAAGGATGATTTACAAGACTGGCTTTTTGTTCTTCTCACACAATTACTTAAGAAAATGGGAGCAGATTTACTTGGATCTGTGCAAGCAAAAGTTCAAAAGGCTCTAGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-MICROEXo1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=FE(23.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCAGAAGCAGAATGTGAGGA
R:
TCCACAAGAGTCTCCAAAAACA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development