GgaEX0029155 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25623970-25625386:-
Coord C1 exon
chr7:25625323-25625386
Coord A exon
chr7:25624369-25624371
Coord C2 exon
chr7:25623970-25624133
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGGAATTCACAACAGAGA
3' ss Score
3.96
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CCGAGTGGAATTGAAAAGGCTGTGTGAAATATTTACTCGGATGTTTGCTGACCCTCACAGCAAG
Seq A exon
AGA
Seq C2 exon
GTCTTCAGCATGTTTCTGGAAACCCTGGTTGATTTCATCATCATTCACAAAGATGACTTGCAGGATTGGCTTTTTGTTCTCCTGACACAGTTGCTGAAGAAAATGGGAGCAGATTTGCTGGGGTCTGTGCAGGCAAAGGTTCAGAAAGCTCTGGATGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(10.7=100),PF116403=TAN=FE(29.2=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.3=100),PF116403=TAN=PD(17.8=23.6)
Main Inclusion Isoform:
ENSGALT00000019030fB3722
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGATGTTTGCTGACCCTC
R:
AGCCAATCCTGCAAGTCATCT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]