GgaEX0029155 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27698127-27699543:-
Coord C1 exon
chr7:27699480-27699543
Coord A exon
chr7:27698526-27698528
Coord C2 exon
chr7:27698127-27698290
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGGAATTCACAACAGAGA
3' ss Score
3.96
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CCGAGTGGAATTGAAAAGGCTGTGTGAAATATTTACTCGGATGTTTGCTGACCCTCACAGCAAG
Seq A exon
AGA
Seq C2 exon
GTCTTCAGCATGTTTCTGGAAACCCTGGTTGATTTCATCATCATTCACAAAGATGACTTGCAGGATTGGCTTTTTGTTCTCCTGACACAGTTGCTGAAGAAAATGGGAGCAGATTTGCTGGGGTCTGTGCAGGCAAAGGTTCAGAAAGCTCTGGATGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
PF116403=TAN=PD(30.9=77.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGATGTTTGCTGACCCTC
R:
AGCCAATCCTGCAAGTCATCT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]