MmuEX0011503 @ mm9
Exon Skipping
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:120443458-120444605:+
Coord C1 exon
chr1:120443458-120443526
Coord A exon
chr1:120444233-120444235
Coord C2 exon
chr1:120444442-120444605
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGCGGTGGAATTCACAACAGAGA
3' ss Score
3.01
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATTGCTGATTCAGAAGCAGAATGTGAGGATAAAGAAGGAAATTTGTTTCCATCAGAAGGCTCTTGTCCA
Seq A exon
AGA
Seq C2 exon
GTTTTCAGTATGTTTTTGGAGACCCTCGTGGATTTTATAATCATTCATAAGGATGACTTGCAAGACTGGCTCTTCGTCCTTCTCACACAACTACTTAAGAAAATGGGAGCAGACTTACTTGGATCTGTGCAAGCAAAAGTTCAGAAGGCTCTCGATGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCAGAAGGCTCTTGTCCA
R:
CGAAGAGCCAGTCTTGCAAGT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: