BtaEX0009121 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73544786-73546000:-
Coord C1 exon
chr2:73545923-73546000
Coord A exon
chr2:73545141-73545143
Coord C2 exon
chr2:73544786-73544949
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGCGGTGGAATTCACAACAGAGA
3' ss Score
3.01
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATTGCTGATTCAGAACATGAGGATAAAGAATGTGAGGATAAAGAAGGAAATTTGTTTCCATCAGAAGGCTCTTGTACA
Seq A exon
AGA
Seq C2 exon
GTTTTCAGTATGTTTTTGGAGACCCTTGTGGATTTTATAATAATTCATAAGGATGACCTGCAAGACTGGCTTTTTGTTCTTCTCACACAATTACTGAAGAAAATGGGAGCGGATTTACTTGGATCTGTGCAAGCAAAAGTTCAGAAGGCTCTTGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF123483=CLASP_N=FE(23.1=100),PF116403=TAN=PD(16.7=21.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCATCAGAAGGCTCTTGT
R:
AAGCCAGTCTTGCAGGTCATC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development