HsaALTD0001661-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:2333]
Coordinates
chr4:8601180-8603224:+
Coord C1 exon
chr4:8601180-8601309
Coord A exon
NA
Coord C2 exon
chr4:8602850-8603224
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTGGGT
5' ss Score
2.85
3' ss Seq
TGCCGACCCTGCCTCCCCAGCCA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GTGAATGCCACAGGCCACCAGCTGCAGACAGCGGTACAGTACCGGGACCTCCCTGGCTTCTGTTCTGTAGGAGGGCTGCAGCCCCCACACTGTCAGAGCACTTTAGGCAGCTGAATCCGTGATTTCAGAA
Seq A exon
NA
Seq C2 exon
CCACCTGCGTGGACCTGCAGCTCAGGACCTGCAGTGATGCCGCCTACAACCACACCACCTTCCCCAACCTGCTTCAGCACCGGTCATGGGAGGTGGTGGAGGCCAGCTCCGAGTACATCCTGCTGAGCGTTCTACACCAGCTCCTGGAAGGCCAGTGCAACCCGGACCTGCGGCTGCTGGGCTGTGCTGTGCTGGCCCCCCGGTGTGAGGGCGGCTGGGTGCGCAGACCCTGCCGGCACATCTGCGAGGGCCTGCGGGAGGTCTGCCAGCCCGCCTTCGACGCCATTGACATGGCCTGGCCCTACTTCCTTGACTGCCACCGCTACTTCACGAGAGAGGACGAGGGCTGCTATGACCCGCTGGAGAAGCTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-3-4,4-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGAGCACTTTAGGCAGC
R:
GAAGGTGGTGTGGTTGTAGGC
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)