HsaEX0017107 @ hg19
Exon Skipping
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:2333]
Coordinates
chr4:8594387-8603224:+
Coord C1 exon
chr4:8594387-8594648
Coord A exon
chr4:8601180-8601313
Coord C2 exon
chr4:8602684-8603224
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGCCATGTCTCTCTTTCCAGGTG
3' ss Score
13.24
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
AGCGGCATCCTCTCTCTAGCTTCTGGCGCTGCCCACTGTAACCCGACTCCGGCATTTGCGTTTGGGGCGCCCTCCCTGCGCCGGGGGCGGGAGCCCAGCGAGCGCAGAGCCCCGGCCCCGCGCGGCCCGAGTGCCACATCACTGCGCTGGCCGTCCAAGGTCCGCCGCCCCACCATGCCGCCCCCGCTGCCGCTGCTGCTCCTTACAGTCCTGGTCGTCGCCGCTGCCCGGCCGGGGTGCGAGTTTGAGCGGAACCCCGCCG
Seq A exon
GTGAATGCCACAGGCCACCAGCTGCAGACAGCGGTACAGTACCGGGACCTCCCTGGCTTCTGTTCTGTAGGAGGGCTGCAGCCCCCACACTGTCAGAGCACTTTAGGCAGCTGAATCCGTGATTTCAGAAGTGG
Seq C2 exon
GCTCTGATTCCTGCACAGTAGCTGTTGTCCTGGTCCTCCCCTGCCAGACCGTGGGTGCCCCTCCCTGCAGGCCCTGGCCCTGCGTGGGGTCCCCTACGTAAATGTCTGATGCGTGACGGTCAGGGCCACTGCAGGAGGGACTGACCTGCCGACCCTGCCTCCCCAGCCACCTGCGTGGACCTGCAGCTCAGGACCTGCAGTGATGCCGCCTACAACCACACCACCTTCCCCAACCTGCTTCAGCACCGGTCATGGGAGGTGGTGGAGGCCAGCTCCGAGTACATCCTGCTGAGCGTTCTACACCAGCTCCTGGAAGGCCAGTGCAACCCGGACCTGCGGCTGCTGGGCTGTGCTGTGCTGGCCCCCCGGTGTGAGGGCGGCTGGGTGCGCAGACCCTGCCGGCACATCTGCGAGGGCCTGCGGGAGGTCTGCCAGCCCGCCTTCGACGCCATTGACATGGCCTGGCCCTACTTCCTTGACTGCCACCGCTACTTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-'0-3,'0-1,4-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.372 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCGGCATTTGCGTTTG
R:
GGAGGACCAGGACAACAGCTA
Band lengths:
257-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)