BtaEX6032368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014803 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:HGNC:2333]
Coordinates
chr6:106626199-106633152:+
Coord C1 exon
chr6:106626199-106626317
Coord A exon
chr6:106631619-106631651
Coord C2 exon
chr6:106632778-106633152
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTTGCCCCCTCTCTCTGCAGGTG
3' ss Score
13.85
5' ss Seq
GCGGTACGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
ATCACTCGCCCGGCCGCCCTGCTCGCCGCCCACCATGCGGCCCCCGCCGCCGCTGCTCCTCACCATGCTGGTCCTCGCCGCCGCCCGGCCCGGGTGCGAGCCCGCCTGGGACCCCGAGG
Seq A exon
GTGGATGCCCCAGGTCTGCAGCTGCAGACAGCG
Seq C2 exon
CCATGTGCGTGGACCTGCAGCTGCAGACCTGCAGTGACGTCACCTACAACCGGACGGCCTTCCCCACGCTGCTGCAACACCGGTCCCGGGAGGCCGTGGAGTCCAGCTCCGAGTACATCCTCCTGAGCGTGCTGCACCACCTCCTGGAGGGCCAGTGCAACCCCGACCTGCGCCTGCTGGGCTGCGCCGTGCTGGCCCCGCGCTGCGAGGGCGGCCGTGTGCGGAGACCCTGCCGCCACGTCTGCGGGGCGCTGCGCGAGGCCTGCCAGCCTGCCTTCGATGCCATCGACATGGCCTGGCCCTACTTCCTCGATTGCGGCCGCTACTTCTCGGGCCCGGAGGAAGGCTGCTATGACCCCCTGGAGAAGCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014803-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCCTCACCATGCTG
R:
CGGTTGTAGGTGACGTCACTG
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]