RnoEX0024342 @ rn6
Exon Skipping
Gene
ENSRNOG00000008947 | Cpz
Description
carboxypeptidase Z [Source:RGD Symbol;Acc:620496]
Coordinates
chr14:80403001-80411150:+
Coord C1 exon
chr14:80403001-80403141
Coord A exon
chr14:80408846-80408878
Coord C2 exon
chr14:80410776-80411150
Length
33 bp
Sequences
Splice sites
3' ss Seq
AGGGTTGTCTCTTTTCCCAGGTA
3' ss Score
8.46
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
CACATCACTGCGCCCTCCCGCGCATCCGCGCATCTGTGCCCACCATGCCTACAACGCCGCTGCTGCTGGCTGCGCTAGCTGCTTTGGCCGCGCTGGCCGTTGCTGCGTACTCCAGCTGCTCGCCTGGACCTGACCCCTCCG
Seq A exon
GTAAATGTCAGAGACTGGCCTCCACACACAGTG
Seq C2 exon
CCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCGGCCTATAACCATACATCGTTCCCCACACCCCTGGAGCACCGTTCGTGGGAGGCAGTGGAGGCCAGCCCTGAATACACACTGTTGGGTGTGCTGCACTTTCTCCTGGAGGGTCAGTGCAACCCTGATCTGCGGCTGCTAGGGTGCTCTGTGCTGGCCCCCAGATGCCAAGGAGGCCACACACAAAGGCCCTGCCGCCGTGTCTGTGAGGGCCTGCGGGAGGCCTGCCAGCCAGCCTTTGACGCCATCGACATGGCCTGGCCCTACTTCCTAGACTGTACCCAATACTTTGCACCAGAGGAGGAAGGCTGCTATGACCCTCTCGAACAGCTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008947-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=WD(100=92.1)
Main Skipping Isoform:
ENSRNOT00000012109fB3555
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGCGTACTCCAGCTG
R:
GGTGTGGGGAACGATGTATGG
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]