MmuEX0012642 @ mm10
Exon Skipping
Gene
ENSMUSG00000036596 | Cpz
Description
carboxypeptidase Z [Source:MGI Symbol;Acc:MGI:88487]
Coordinates
chr5:35517393-35525698:-
Coord C1 exon
chr5:35525433-35525698
Coord A exon
chr5:35519081-35519113
Coord C2 exon
chr5:35517393-35517767
Length
33 bp
Sequences
Splice sites
3' ss Seq
AGGGTTGTCTCTTTTCCCAGGTA
3' ss Score
8.46
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAATCCCTTCTCCAGTGTCTGGCGCTGCCGGTTGTAACCCGACTCCTGAGCCCGCTCCTCACCCCTCCCCCCCTCCTCAGCCGAAGGGCCCAGCAGCGCCTCTCGCGCTCCCCGAGTGCCACATCACTGCGCCCTCCCGCGCATCCGTGCATCTGTGCCCACCATGCCGACAATGCCGCTGCTGCTGGCCGCGCTGGCTGCGCTGGCCGTGCTGGCCCTTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGACCCGACCCCTCCG
Seq A exon
GTAAATGTCAGAGGCTGGTCTACACACACAGTG
Seq C2 exon
CCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGTTCCCCACACCGCTGGAGCACCGGTCGTGGGAGGCAGTGGAGTCTAGCCCTGAGTACATGCTGTTGGGTGTGATACACTTTCTCCTGGAGGGTCAGTGCAACCCTGACCTGCGGCTGCTAGGGTGCTCTGTGTTGGCCCCCCGATGTGAGGGAGGCCACACACAAAGGCCCTGCCGGCATGTCTGTGAGGGCCTTCGGGAGGCCTGCCAGCCGGCCTTTGACGCCATCGACATGGCCTGGCCCTACTTCCTTGATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGCTGCTATGACCCTCTGGAAGAGCTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036596_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=WD(100=92.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGCCGCTGCTGCT
R:
CTGAGATGCAGGTCCACACAG
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types