Special

MmuEX0012642 @ mm9

Exon Skipping

Gene
ENSMUSG00000036596 | Cpz
Description
carboxypeptidase Z [Source:MGI Symbol;Acc:MGI:88487]
Coordinates
chr5:35860042-35868347:-
Coord C1 exon
chr5:35868082-35868347
Coord A exon
chr5:35861730-35861762
Coord C2 exon
chr5:35860042-35860416
Length
33 bp
Sequences
Splice sites
3' ss Seq
AGGGTTGTCTCTTTTCCCAGGTA
3' ss Score
8.46
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAATCCCTTCTCCAGTGTCTGGCGCTGCCGGTTGTAACCCGACTCCTGAGCCCGCTCCTCACCCCTCCCCCCCTCCTCAGCCGAAGGGCCCAGCAGCGCCTCTCGCGCTCCCCGAGTGCCACATCACTGCGCCCTCCCGCGCATCCGTGCATCTGTGCCCACCATGCCGACAATGCCGCTGCTGCTGGCCGCGCTGGCTGCGCTGGCCGTGCTGGCCCTTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGACCCGACCCCTCCG
Seq A exon
GTAAATGTCAGAGGCTGGTCTACACACACAGTG
Seq C2 exon
CCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGTTCCCCACACCGCTGGAGCACCGGTCGTGGGAGGCAGTGGAGTCTAGCCCTGAGTACATGCTGTTGGGTGTGATACACTTTCTCCTGGAGGGTCAGTGCAACCCTGACCTGCGGCTGCTAGGGTGCTCTGTGTTGGCCCCCCGATGTGAGGGAGGCCACACACAAAGGCCCTGCCGGCATGTCTGTGAGGGCCTTCGGGAGGCCTGCCAGCCGGCCTTTGACGCCATCGACATGGCCTGGCCCTACTTCCTTGATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGCTGCTATGACCCTCTGGAAGAGCTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036596_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.011
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF0139217=Fz=WD(100=92.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000039804





     
                   









    
Main Skipping Isoform:
ENSMUSP00000123537





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr4:8601180-8601313 
ALTERNATIVE
HsaEX0017107
(CPZ)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr6:106631619-106631651 
HIGH PSI
BtaEX6032368
(CPZ)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr1:40099767-40099796 
HIGH PSI
DreEX0024110
(cpz)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GACAATGCCGCTGCTGCT

				
R: 
CTGAGATGCAGGTCCACACAG

				
Band lengths: 
123-156

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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