DreEX0024110 @ danRer10
Exon Skipping
Gene
ENSDARG00000075521 | cpz
Description
carboxypeptidase Z [Source:ZFIN;Acc:ZDB-GENE-090313-267]
Coordinates
chr1:40098909-40102332:+
Coord C1 exon
chr1:40098909-40099037
Coord A exon
chr1:40099767-40099796
Coord C2 exon
chr1:40101958-40102332
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGTCAATAATTGTTTTTTAGGAA
3' ss Score
8.82
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
CACGTCGTAGCGACTGCCACATCACTGGGTCTATGGACAACAAAATGCTGACGCTTTTAATACTTCTGAACGCACTGGCCACATGCCTGAGCTTTCCACAGCGATGTACACAGGAAGAAGCTGCAATAG
Seq A exon
GAAGATGCAGAACACCTGCAGAAGAGGGTC
Seq C2 exon
CGCAGTGCATAGAGATGGTTCTTGGCTACTGTCAGGATGTCCCATACACCCACACTACATTCCCCAACATTGTGGGCCACCGTACACGGCAGGATTTAGAGATGGGTGCAGAGTACCTGCTCCTGAGCGTGATCCACGGCCTGATGAAGGGAGAGTGTTCTCCAGACATCCGTATACTGGGATGCTCAGTTTTGGCTCCTCGCTGTGAAAACGGGAGGCTCATGAAGCCGTGCCGCAGCTCCTGTGAGATGCTGAAAAAGAGCTGCATTCATGCCTTCGAGGCCATTCAGATGGCATGGCCTTACTTTCTGGATTGCGACCGCTTCTTTGTTGGCAGCGAGGAGGGTTGTTATGATCCACTGTCAGAGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075521-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCCTGAGCTTTCCACAG
R:
TGGGGAATGTAGTGTGGGTGT
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]