HsaEX0017106 @ hg19
Exon Skipping
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:2333]
Coordinates
chr4:8594387-8601212:+
Coord C1 exon
chr4:8594387-8594648
Coord A exon
chr4:8599142-8599323
Coord C2 exon
chr4:8601180-8601212
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATGCCTCCTTTATGCTGCAGATT
3' ss Score
9.19
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGCGGCATCCTCTCTCTAGCTTCTGGCGCTGCCCACTGTAACCCGACTCCGGCATTTGCGTTTGGGGCGCCCTCCCTGCGCCGGGGGCGGGAGCCCAGCGAGCGCAGAGCCCCGGCCCCGCGCGGCCCGAGTGCCACATCACTGCGCTGGCCGTCCAAGGTCCGCCGCCCCACCATGCCGCCCCCGCTGCCGCTGCTGCTCCTTACAGTCCTGGTCGTCGCCGCTGCCCGGCCGGGGTGCGAGTTTGAGCGGAACCCCGCCG
Seq A exon
ATTGGTGGAGTCTGGGGACGCTCTGTCTGGACCATGAAGGCCTGGGAGTCACGTGAGGGTGCCAGGGAGGGTGTCTGGACAGTCTCACGCCCACAGGCCCGTGACAGTCATCCAGGGGGACTCAAGCTCCTCTGTGCTCATCCCAGCGCGCGTTGTGGGCGTCCGCGGGCATGGACGGGCAG
Seq C2 exon
GTGAATGCCACAGGCCACCAGCTGCAGACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCGGCATTTGCGTTTG
R:
CTGTCTGCAGCTGGTGGC
Band lengths:
249-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)