HsaALTD0001727-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000169862 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) [Source:HGNC Symbol;Acc:2516]
Coordinates
chr5:11565056-11588923:-
Coord C1 exon
chr5:11588858-11588923
Coord A exon
chr5:11588847-11588857
Coord C2 exon
chr5:11565056-11565168
Length
11 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTTGATGGGTTTCTTTCAGGAA
3' ss Score
8.45
Exon sequences
Seq C1 exon
GGGACTAGTCGTCTTGTTTGCCTAGACTACAGTTTTCAAGTATTTAAGGACCATTTATTTCAAAAG
Seq A exon
GTACAGTAAAG
Seq C2 exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGGCAGATCGTAGCCAGCCAGCTGGAGCGATGCAAGCTCGGATCCGAGACTGGCAGCATGAGCAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169862-4-7,5-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.729
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF034419=FAD_binding_7=FE(29.6=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTAGTCGTCTTGTTTGCC
R:
CGGGTCAGCCTTTCAAACTGT
Band lengths:
92-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)