RnoALTD0008059-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83414726-83543808:+
Coord C1 exon
chr2:83414726-83521452
Coord A exon
NA
Coord C2 exon
chr2:83543696-83543808
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTGGTGTGTCTCTTTCAGGAA
3' ss Score
12.59
Exon sequences
Seq C1 exon
CAAATCTGGGGCAAAGGAAAGGAAGAGTAGAAAACTAGGATTTGCTGTGCTGGCTAGTGGGAGGGTCCTTTTGTGATGAAATGTTGCATAAATAATGCCAGTGGGGGTCTAAATTCACTGTTGCCATGGAGACCTTTGTGCCTGACTGAACTCTATTCTTTTCCTTTTTAAGACAGCCACCACTAGGCTTGTGCTATCTGATGCATCTTGCTTTGCTTTCTCTGAACACTGCTAGTGGAAGCAGAAATTAAAGTGTGGAAATTCTGCATCCTGACTTTTTCTGGACCGCTATTCTCTGCCTTCTTGGATTTTGAGCTCCTCTGCTTGCATTTAGCCTTCCTTACTGGAGGGAGGAGCCGGTGGGTTGAAAGCCTGGAACAGCCCGCTCTGCCTGGGGGAGGGTGGAGTAACCCTTCTTCATCTCTGGACTGGTGGACTTGCCTGCCGGGACCACAGTGTTCAAGTTGTTAAGGACCCTTTATTTCCAAGGTCCAGCAAAG
Seq A exon
NA
Seq C2 exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGCCAGATCGTGGCCAGCCAGCTGGAGAGATGCAAGCTTGGCTCCGAGACAGGAAGCATGAGCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-5-3,6-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTTGAAAGCCTGGAACA
R:
TGATGCTGCTCATGCTTCCTG
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]