HsaALTD0001789-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124499681-124519445:+
Coord C1 exon
chr9:124499681-124499796
Coord A exon
chr9:124499797-124499994
Coord C2 exon
chr9:124519292-124519445
Length
198 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CACACCTACTGCCACCCCAGGTC
3' ss Score
5.42
Exon sequences
Seq C1 exon
CTTGGAAGACACAGATTCAGCACGTGCCTTTCGGGAAGGGGAAGCCCTCCTAGGCTCACCTCTTAGATGCCGGCCCGGCCGAGAGGCCCCCTAATCTGTCCAGAAGAGCTGCCTGG
Seq A exon
GTGAGCACCACCCTTGGGAATGGGCCTCTGTGGCCTTGGACTTCTTAGTGACAACTTCGGCAAGATCCTGGGCCGGGCCGGAGGGGCTGCTCACTGGAGACCTGGCCATCTTCGGAAGCCAGATCTGGCTCCAGAGCCTCGGGGGTTGCAAGTGCCCAGAACCAGGTCAGCAGAGAGGCCTGCGCTCCCACCACAAAG
Seq C2 exon
GTCCCATCTGATGCCGAGGCTGAAGGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAAGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTTGGCCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-7-11,8-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.246
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(57.5=87.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTCAGCACGTGCCTTT
R:
GAAGCAGTAGTCCTGGCCAAG
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)