MmuALTD0003938-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35692333-35707801:+
Coord C1 exon
chr2:35692333-35692374
Coord A exon
chr2:35692375-35692410
Coord C2 exon
chr2:35707648-35707801
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CCTGCTAACCACCTCCTCAGGTC
3' ss Score
7.6
Exon sequences
Seq C1 exon
TCCTCGGAAGCCTCATCTGGCTGCTGGGCCTCAGATGCCCAG
Seq A exon
GTCAGCAGAGAGGCCTACACTCCTATCGTTGCCAAG
Seq C2 exon
GTCCCATCTGATGCCAAGGCTGAAGGAGTCTCGGTCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGATTATCAAGCCCGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-15-19,16-19,17-19-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(61.7=96.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGCCTCAGATGC
R:
ATCACCTCCTCCTCCATGCTG
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types