MmuALTD0003938-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35692333-35707801:+
Coord C1 exon
chr2:35692333-35692374
Coord A exon
chr2:35692375-35692469
Coord C2 exon
chr2:35707648-35707801
Length
95 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
CCTGCTAACCACCTCCTCAGGTC
3' ss Score
7.6
Exon sequences
Seq C1 exon
TCCTCGGAAGCCTCATCTGGCTGCTGGGCCTCAGATGCCCAG
Seq A exon
GTCAGCAGAGAGGCCTACACTCCTATCGTTGCCAAGGTCTGTGACTGGATGTGTAGGGAAGGAGGAAGAGGACACAGGTTCTTGCTCCCTGTCCT
Seq C2 exon
GTCCCATCTGATGCCAAGGCTGAAGGAGTCTCGGTCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGATTATCAAGCCCGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-15-19,16-19,17-19-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(61.7=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGGAAGCCTCATCTGG
R:
CTGCTGTGAACGGGCTTGATA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types