HsaALTD0002023-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140006142-140006481:-
Coord C1 exon
chr9:140006393-140006481
Coord A exon
NA
Coord C2 exon
chr9:140006142-140006206
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTACTG
5' ss Score
4.48
3' ss Seq
ACTTTCTCTGCCCCTTGCAGATC
3' ss Score
12.4
Exon sequences
Seq C1 exon
GCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGACCTGCCCTTCACTGACGAGCTCCGCCAGCG
Seq A exon
NA
Seq C2 exon
ATCTCAGAGCCGCCAGCAACATCATCTTCTCCAACGGGAACCTGGACCCCTGGGCAGGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-21-26,23-26-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.1=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCGAGATCAACCTGAC
R:
TGCCCAGGGGTCCAGGTT
Band lengths:
143-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)