Special

HsaALTD0002023-2/2 @ hg19

Alternative 5'ss

Gene
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140006142-140006481:-
Coord C1 exon
chr9:140006393-140006481
Coord A exon
chr9:140006325-140006392
Coord C2 exon
chr9:140006142-140006206
Length
68 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ACTTTCTCTGCCCCTTGCAGATC
3' ss Score
12.4
Exon sequences
Seq C1 exon
GCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGACCTGCCCTTCACTGACGAGCTCCGCCAGCG
Seq A exon
GTACTGCCTGGACACCTGGGGCGTGTGGCCCCGGCCCGACTGGCTGCTGACCAGCTTCTGGGGGGGTG
Seq C2 exon
ATCTCAGAGCCGCCAGCAACATCATCTTCTCCAACGGGAACCTGGACCCCTGGGCAGGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-21-26,23-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF055777=Peptidase_S28=FE(12.1=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(16.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCGAGATCAACCTGAC
R:
TGCCCAGGGGTCCAGGTT
Band lengths:
143-211
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development