HsaALTD0002023-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr9:137111690-137112029:-
Coord C1 exon
chr9:137111941-137112029
Coord A exon
chr9:137111873-137111940
Coord C2 exon
chr9:137111690-137111754
Length
68 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ACTTTCTCTGCCCCTTGCAGATC
3' ss Score
12.4
Exon sequences
Seq C1 exon
GCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGACCTGCCCTTCACTGACGAGCTCCGCCAGCG
Seq A exon
GTACTGCCTGGACACCTGGGGCGTGTGGCCCCGGCCCGACTGGCTGCTGACCAGCTTCTGGGGGGGTG
Seq C2 exon
ATCTCAGAGCCGCCAGCAACATCATCTTCTCCAACGGGAACCTGGACCCCTGGGCAGGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-23-36,24-36,25-36,26-36-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.338
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.1=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCGAGATCAACCTGAC
R:
TGCCCAGGGGTCCAGGTT
Band lengths:
143-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains