HsaALTD0002567-2/6 @ hg19
Alternative 5'ss
Gene
ENSG00000132436 | FIGNL1
Description
fidgetin-like 1 [Source:HGNC Symbol;Acc:13286]
Coordinates
chr7:50515879-50517393:-
Coord C1 exon
chr7:50517277-50517393
Coord A exon
chr7:50517261-50517276
Coord C2 exon
chr7:50515879-50515987
Length
16 bp
Sequences
Splice sites
5' ss Seq
TTGGTACTG
5' ss Score
2.29
3' ss Seq
CTGTTCAATCTGTGACCTAGGAT
3' ss Score
6.88
Exon sequences
Seq C1 exon
ATTTTCCTGCAGTCACTGCTGGCAGATGATAGAGCCAGGATTTGAAAGCAGGCAGCCTGGCTCCAGACCCTGTGCTCTTAACTCCCGTTTTGCATCAAGAACAGAATCCTATGAAAG
Seq A exon
GCTTGCACAGTGCTTG
Seq C2 exon
GATAGCAGCATCAAGGAGCATTGTGTACATGCAGAAGTGCACAGTACCTGGAGTGAAACTGCTTGTGTTCGATTTCTGATACCATTCATAACTGGCTGTGTGATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132436-2-4,3-4,4-4,5-4,7-4,8-4-2/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGGATTTGAAAGCAGGC
R:
ACAATGCTCCTTGATGCTGCT
Band lengths:
109-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)