HsaEX0025802 @ hg19
Exon Skipping
Gene
ENSG00000132436 | FIGNL1
Description
fidgetin-like 1 [Source:HGNC Symbol;Acc:13286]
Coordinates
chr7:50515879-50518022:-
Coord C1 exon
chr7:50517999-50518022
Coord A exon
chr7:50516816-50517421
Coord C2 exon
chr7:50515879-50515987
Length
606 bp
Sequences
Splice sites
3' ss Seq
TTGCTGCGCTTCTTTTATAGGTG
3' ss Score
11.52
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCCAGCGTCCCACACCAGCCGCAG
Seq A exon
GTGAAAACCGGCAGAAAGACATTAAGAGATTTTCCTGCAGTCACTGCTGGCAGATGATAGAGCCAGGATTTGAAAGCAGGCAGCCTGGCTCCAGACCCTGTGCTCTTAACTCCCGTTTTGCATCAAGAACAGAATCCTATGAAAGGCTTGCACAGTGCTTGGTACTGAGTAGGCACTCCGTCAGTATTTTAGTAGCTATTATTCCAAAGGACACTGTATTCTAGGTACTAAGACAATGTGAATGGAATGGAAAACAATTCCTCCCTGCAGAAGCCAACTGTCTAGGAAGACAGATAATGACATTATTAAAATAATCAGAACATTGGCAAAATAAAGAAGATTGAAATGCAGTTCATATGACAGTGCTAATTAATCATACTTTTTAGATCTAGGAAAGGCCATAAAGGTTAAATTGACTTGGAAATGGTAAACAAGACAATGGTTGTGTCACTGATCGGTGATGGCCAGTTTTTGGTTATCCTTATTTGCCATTTAAATGATTGAATTGAAAGGAAGAAGTAAGACTTGGAAGATGAATATTGAAGGAAAGGTGAAGATGGAAAAGAGAAGGGGGTTTATTCTGAGAACAGTGACTAGAACTCTGAG
Seq C2 exon
GATAGCAGCATCAAGGAGCATTGTGTACATGCAGAAGTGCACAGTACCTGGAGTGAAACTGCTTGTGTTCGATTTCTGATACCATTCATAACTGGCTGTGTGATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132436_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)