HsaALTD0002567-8/8 @ hg38
Alternative 5'ss
Gene
ENSG00000132436 | FIGNL1
Description
fidgetin like 1 [Source:HGNC Symbol;Acc:HGNC:13286]
Coordinates
chr7:50448181-50449695:-
Coord C1 exon
chr7:50449579-50449695
Coord A exon
chr7:50449118-50449578
Coord C2 exon
chr7:50448181-50448289
Length
461 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CTGTTCAATCTGTGACCTAGGAT
3' ss Score
6.88
Exon sequences
Seq C1 exon
ATTTTCCTGCAGTCACTGCTGGCAGATGATAGAGCCAGGATTTGAAAGCAGGCAGCCTGGCTCCAGACCCTGTGCTCTTAACTCCCGTTTTGCATCAAGAACAGAATCCTATGAAAG
Seq A exon
GCTTGCACAGTGCTTGGTACTGAGTAGGCACTCCGTCAGTATTTTAGTAGCTATTATTCCAAAGGACACTGTATTCTAGGTACTAAGACAATGTGAATGGAATGGAAAACAATTCCTCCCTGCAGAAGCCAACTGTCTAGGAAGACAGATAATGACATTATTAAAATAATCAGAACATTGGCAAAATAAAGAAGATTGAAATGCAGTTCATATGACAGTGCTAATTAATCATACTTTTTAGATCTAGGAAAGGCCATAAAGGTTAAATTGACTTGGAAATGGTAAACAAGACAATGGTTGTGTCACTGATCGGTGATGGCCAGTTTTTGGTTATCCTTATTTGCCATTTAAATGATTGAATTGAAAGGAAGAAGTAAGACTTGGAAGATGAATATTGAAGGAAAGGTGAAGATGGAAAAGAGAAGGGGGTTTATTCTGAGAACAGTGACTAGAACTCTGAG
Seq C2 exon
GATAGCAGCATCAAGGAGCATTGTGTACATGCAGAAGTGCACAGTACCTGGAGTGAAACTGCTTGTGTTCGATTTCTGATACCATTCATAACTGGCTGTGTGATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132436-3-15,4-15,5-15,6-15,7-15,8-15,9-15,10-15-8/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCACTGCTGGCAGATGAT
R:
TGAGATCACACAGCCAGTTATGA
Band lengths:
216-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains