HsaINT1013657 @ hg38
Intron Retention
Gene
ENSG00000132436 | FIGNL1
Description
fidgetin like 1 [Source:HGNC Symbol;Acc:HGNC:13286]
Coordinates
chr7:50448181-50449723:-
Coord C1 exon
chr7:50449563-50449723
Coord A exon
chr7:50448290-50449562
Coord C2 exon
chr7:50448181-50448289
Length
1273 bp
Sequences
Splice sites
5' ss Seq
TTGGTACTG
5' ss Score
2.29
3' ss Seq
CTGTTCAATCTGTGACCTAGGAT
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTGAAAACCGGCAGAAAGACATTAAGAGATTTTCCTGCAGTCACTGCTGGCAGATGATAGAGCCAGGATTTGAAAGCAGGCAGCCTGGCTCCAGACCCTGTGCTCTTAACTCCCGTTTTGCATCAAGAACAGAATCCTATGAAAGGCTTGCACAGTGCTTG
Seq A exon
GTACTGAGTAGGCACTCCGTCAGTATTTTAGTAGCTATTATTCCAAAGGACACTGTATTCTAGGTACTAAGACAATGTGAATGGAATGGAAAACAATTCCTCCCTGCAGAAGCCAACTGTCTAGGAAGACAGATAATGACATTATTAAAATAATCAGAACATTGGCAAAATAAAGAAGATTGAAATGCAGTTCATATGACAGTGCTAATTAATCATACTTTTTAGATCTAGGAAAGGCCATAAAGGTTAAATTGACTTGGAAATGGTAAACAAGACAATGGTTGTGTCACTGATCGGTGATGGCCAGTTTTTGGTTATCCTTATTTGCCATTTAAATGATTGAATTGAAAGGAAGAAGTAAGACTTGGAAGATGAATATTGAAGGAAAGGTGAAGATGGAAAAGAGAAGGGGGTTTATTCTGAGAACAGTGACTAGAACTCTGAGGTATGGTAGAAATTTCAGGATAACAGATGATAAAGGGGAATGAAGCCATGGAGAGGAAGAGAATGATAATATTAATTGTGAAAGTTTGTGTCAAGTGTTTTCTGAGTCACCTTTCTTTCAGTTTCTCATTTCTAGTATTGTATAAATGAGTTTAACATCAAAATGGTATAGTGAAAAAAAGGATGAACTGCTTGACAGAAGAGGTCAGATCTAGTTTTGACTCTAGCTTATTTAGCTTTACAGCTTTAAATAAATTACAGTGTCTTTAAAGCTCTGGATCTTAAGTTTTCTAATTGTTTTTTAAACAAAGATTTGTGAACACCTACTTACAATGTGACAAATGTCTTTGTAAGGCATTATGGGAGATAAAAGCTGCATTAAACCTGGCTGTTGTACTTACAAGTAATTTGGAAGGCAAAATTTCAAATACTTGAACCTAAAGTAGGGTTTCTTGGTTTTCATTTAATTGAAATACTGTTAGGAAACAAAAATTTTTCATAAATTTTTCTTGTGGATATGTAAGTAAATTCTATATATCTAGCAATATGATACATCTATAGTTCTGTTTAAAGGTAACAATGTGAGGAAGCTTATGCGAATAACTTGACAGAAGAAATCTAAAGTAAAAGCATTTTCCTAGTAGGCTAGCTTGTTCTCTTATTTCATTTATTGTAACAGTTTCACTTTTTAATAATTATGTGAAATTAGGAAACAGATATTCTAGGGCATTCTGTTTAGGGTGATGAACTTATTCATGAATGTTATTAAAACCATTTAAATATGCCATAGTTTAAATTTGTGATCCATGCTGTTCAATCTGTGACCTAG
Seq C2 exon
GATAGCAGCATCAAGGAGCATTGTGTACATGCAGAAGTGCACAGTACCTGGAGTGAAACTGCTTGTGTTCGATTTCTGATACCATTCATAACTGGCTGTGTGATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132436:ENST00000395556:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAACCGGCAGAAAGACA
R:
TTGAGATCACACAGCCAGTTATGA
Band lengths:
270-1543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains