MmuINT0064559 @ mm9
Intron Retention
Gene
ENSMUSG00000035455 | Fignl1
Description
fidgetin-like 1 [Source:MGI Symbol;Acc:MGI:1890648]
Coordinates
chr11:11706099-11708965:-
Coord C1 exon
chr11:11708888-11708965
Coord A exon
chr11:11706219-11708887
Coord C2 exon
chr11:11706099-11706218
Length
2669 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
3' ss Seq
CATCTTTCTGTTCCATGCAGCTC
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTCACTTCGCGCAGGCGCACTTCGAAAGGCGCGCTTTTCGGTGGCTGCGGTCCCGGCAGGGAGCACAGGTGGGCCCCG
Seq A exon
GTAGGCTGCTGTTCGCCGCTAAGCCGGCGGGCGGAGGCTGTGGTTGCCATGCCGGGTGTACTTTGGTTTTGTTTTCTTCTGTCCGTTCTTGGCCTCGGGTTGTCGGAGAGGGTGGCCTTGGGAAGCCCGCGGCCAGACGGCGGCTGGGGCTGAGGGACGCCGTTGGGCGTGACGGTTTGGGGTCAGTCAGCCACAGCTACCCCCCGCTAGGACTGCTGGGAATGCTGTAGCTGGTTTGCCACCTAAATGTACTCATTTTGAGTTTCGTGCTTTCGGCAATACTAACACAGGTGAATTTTCTCCGAAAATCAGAAATGCTCCAGCATCTGAACTTGACGCCTAAAATAACATCCTCATCATGAAACTTTTTTTTTTTTTTTAAATTCATTCCTGCTCAGAAAATAGTATCTACAGTTAACCGTCTGGTTATGTAGCTAATGTATATTTTAAGTATACGTGAGTTGTATTTAGAATGGAGTCCCCTACCTGATGTATGTGTCAATACCTAGAAATCAGACACACTCCTGACCCCGAGCAGTTGGACTAAAGATACTTTTCAGTTGTGATAACTGGTTCCAGGCCATACGCAGTCGCTACGGCCTGAGGGGGGAACCTTCCAAAGGGAAGAAATAATAATTCATAATCTATCATATTTCTAAGTTCTGGGGACCCTATAATGCAACAACCTGTCAGCTAAATAATGGTGCACGCTGTTTCTCCCCAGGTGACGACATAGCTTAAGAGATATTCTCAGAGTCACTGCTGAAAGAACAGATTATGTATTCAGAATTCAGGGCCTGGGAAATGGCTTAGTGGGTCAAAGCTGCCGAACCTGAGGACCTGAATCCCTAAGAACTGTCCTGGTAAAAAGAGAAAATTCAGTTCCTGCAAGTTGCTCTCAGACTTCCCCAATTTATTACAATTAATTAAAACTTTTATGTCCAGTGTCTAAAGCTAGGTCTTACAGCTTCAGATCCTGTGTTCTAAATTCCTATGCTACTTTGCCACTAGTAAACTAGAGTTCTGTAAAGTTCAAAAATGATGTCTGGAATATAGTAGGCCCTCCAGTTTTTAATCATTTTAGTGGATACCATGAACTACGTACTAAAGAAAATCTAAATACAATGAGAAGTAGTTCTTGTTTGCAGAAGCTTCCTGTCTAGTTTGAATGACCAAAACATTCTTAATCAGAAAATTAACAAAGTAAAGAAAATTGAAATGTAACTCGGTTGCCCATACTTTATAGATTTCTATCAAGCACAAAGGTTAAAATGACTTAGAAGTGTTAGATAATACGGTCAGTACTTGTGTCATTGAGCAACAGACTGTTTTGGGTTGTATGTAGTTGTGGGATATGACTGACTGGAAAGGAAGGAAAACTTGGTCGATAACTTCTAAATACAAAGATGGTGGTGGAAGAGGACAGTTTTTGGAGAATGACTAGAATAGGTGATTTTAGGTGATAGACTGAAATGAAGCTATAAAGATAATTATAATCATTGCGAACCTTTGTGGAGGATATTTTCCAAGTTACTTCTCCTTCAGGTTCTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTGCCTCCCGAGTGCTGGGATTCAAGGCGTGCGCCACCATGCCTGGCTTCCTTCAGGTTCTTATTTCTGGTGTTGTATAATGGAGAGTAAAATAAGGTTAAAGCAGATGAAAGCAGGGCTACTTACTTGCCTCAGAACTGTTGATCCAGTTTCAATTTAAGTAACAGTTTGACTAGATGTTAAGTTTCCCATTATTATAAGCAGAGATGTATGCTTACCTACTTATAATGTGGTAAATTTTTTCCACAGCATTGTCAGAGATAATAGCTATATTAACCAGGAGTGGTTACCCTTTTACTCCCGGTGCTTCAGAGGCAGAAACAGGTGAATCTCAGAAACAGGTGAGGTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGGCAGCCAGGGTACACAGAGTAACCCTTTCTCAAAAACCTACCACCATCACCACCATCAAAGCTGTATTAAATATAGCTCACATAGAAAGTATTGATTATTTAGCTGTACTTCCAGATAAATAGAAATTAAATTTAAAATGTAGATATTCTTTTGCTTTATCATAGTTCTTAGGGAACCAAATGGTTTTCTTAAAATTTTTTCATCTTAGTATCTAGGCAAAAAGTTGTACATTACAAAAGTAGTTTTTTCATTATTTAGTGGTAGGTTGGGCACATTTGTGTCAAGCTGTGCATGTGGATGGCAGGGGACTGCTTTCAGGAACCACGTAGGCCTGAGAACTTAACTTGGCAGGCCTGTGCTAAGCTCTCTCCTTGGCCCCATTGTATATTTCCCTAAGATTCTTTACAACAATGTGAAGGGGCTTATGAGACTATCTCAGGAAAAATCTGAAATAAAACCCCTATCTAGTAGACTATTTGGCTTATTCTTAGAGTTTATTTTTTATAGGTTTTAATTTTTAACACTGAGAAATGGGGGAAAATTTGGAAGATTTGTGCCATCATGTTTCAAGTGTTTATTCACGATAAATCATTAAAGATATGAAACATGTCACCATCTTTCTGTTCCATGCAG
Seq C2 exon
CTCATCCTGTGCTGATAACATCGAGAAGTGTTCAGTGCCTGGTAAAGTACATAGACCTTGCTTCACTTGGAACTCGGCCTTGATTTCTGCCGTTGGTCATAATCAGCAGAGTTCTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035455-Fignl1:NM_001163359:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: