MmuALTD0005558-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000035455 | Fignl1
Description
fidgetin-like 1 [Source:MGI Symbol;Acc:MGI:1890648]
Coordinates
chr11:11706099-11708998:-
Coord C1 exon
chr11:11708898-11708998
Coord A exon
NA
Coord C2 exon
chr11:11706099-11706218
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CATCTTTCTGTTCCATGCAGCTC
3' ss Score
9.42
Exon sequences
Seq C1 exon
TACTCTACACGCATGCGCAACGCGGGCCGAGCCGTCACTTCGCGCAGGCGCACTTCGAAAGGCGCGCTTTTCGGTGGCTGCGGTCCCGGCAGGGAGCACAG
Seq A exon
NA
Seq C2 exon
CTCATCCTGTGCTGATAACATCGAGAAGTGTTCAGTGCCTGGTAAAGTACATAGACCTTGCTTCACTTGGAACTCGGCCTTGATTTCTGCCGTTGGTCATAATCAGCAGAGTTCTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035455-0-1,1-1,2-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGCACTTCGAAAGGC
R:
GGCACTGAACACTTCTCGATGT
Band lengths:
95-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: